ABOUT THIS RECORDspecies: Apis mellifera
miRNA family: mir-1
source: miRBase, original name: ame-mir-1-1 (MI0001575)
Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTATGGAG miRNA* CCGTGCTTCCTTACTTCCCATA mismatches: 4 bulges: 0 |
pre-miRNA
CCGGGCGATGCTGTTCCGTGCTTCCTTACTTCCCATAGTGGATGCGACGTATGGAATGTAAAGAAGTATGGAGCTGCGCCCGG
dot-bracket secondary structure
(((((((.....((((((((((((.((((...(((((((.(...).)).)))))...)))).))))))))))))..)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: array, RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
CCGGGCGATGCTGTTCCGTGCTTCCTTACTTCCCATAGTGGATGCGACGTATGGAATGTAAAGAAGTATGGAGCTGCGCCCGG
dot-bracket secondary structure
(((((((.....((((((((((((.((((...(((((((.(...).)).)))))...)))).))))))))))))..)))))))
SIMILARITIES| miRBase ame-mir-1-2: 6e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 3e-35 |
Identical with: ame-mir-1-2 from miRBase (MNEST035339) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: array, RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
