ABOUT THIS RECORDspecies: Apis mellifera
miRNA family: mir-7
source: miRBase, original name: ame-mir-7 (MI0001594)
Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGACTAGTGATTTTGTTGT miRNA* AACAAGGAATCACTAATCATCCTAC mismatches: 3 bulges: 2 |
pre-miRNA
CGAGCGCCGTTGCATGGAAGACTAGTGATTTTGTTGTTCTACTTTCGATATAACAAGGAATCACTAATCATCCTACAAAGGCGCTCG
dot-bracket secondary structure
((((((((.(((...(((.((.(((((((((((((((((.......)).))))))..))))))))).)).)))..))).))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
CGAGCGCCGTTGCATGGAAGACTAGTGATTTTGTTGTTCTACTTTCGATATAACAAGGAATCACTAATCATCCTACAAAGGCGCTCG
dot-bracket secondary structure
((((((((.(((...(((.((.(((((((((((((((((.......)).))))))..))))))))).)).)))..))).))))))))
SIMILARITIES| miRBase nlo-mir-7: 2e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-7: 5e-43 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
