miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Drosophila melanogaster, Bombyx mori, Aedes aegypti, Litopenaeus vannamei, Lepeophtheirus salmonis, Acyrthosiphon pisum, Culex quinquefasciatus, Anopheles gambiae, Dendroctonus ponderosae, Daphnia pulex, Nasonia vitripennis, Drosophila simulans, Petrolisthes cinctipes, Aphis gossypii, Glossina morsitans morsitans, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Locusta migratoria, Phlebotomus papatasi, Penaeus monodon, Drosophila sechellia, Drosophila auraria, Artemia franciscana, Nilaparvata lugens, Antheraea assama, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Caligus rogercresseyi, Nasonia giraulti, Homarus americanus, Bombus terrestris, Myzus persicae, Drosophila willistoni, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Spodoptera littoralis, Peregrinus maidis, Samia cynthia ricini, Drosophila mojavensis, Danaus plexippus, Cochliomyia hominivorax, Anopheles stephensi, Diabrotica virgifera virgifera, Haematobia irritans irritans, Eriocheir sinensis, Papilio xuthus, Onychiurus arcticus, Rhodnius prolixus, Carcinus maenas, Polypedilum vanderplanki, Ostrinia nubilalis, Lernaeocera branchialis, Caligus clemensi, Laupala kohalensis, Frankliniella occidentalis, Daphnia magna, Gammarus pulex, Trichoplusia ni, Calanus finmarchicus, Gryllus bimaculatus, Drosophila yakuba, Epiphyas postvittana, Callinectes sapidus, Fenneropenaeus chinensis, Apis mellifera, Tribolium castaneum

ABOUT THIS RECORD

ID: MNEST035343
species: Apis mellifera
miRNA family: mir-7
source: miRBase, original name: ame-mir-7 (MI0001594)

Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGGAAGACTAGTGATTTTGTTGT

miRNA*
AACAAGGAATCACTAATCATCCTAC

mismatches: 3
bulges: 2

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pre-miRNA
CGAGCGCCGTTGCATGGAAGACTAGTGATTTTGTTGTTCTACTTTCGATATAACAAGGAATCACTAATCATCCTACAAAGGCGCTCG

dot-bracket secondary structure
((((((((.(((...(((.((.(((((((((((((((((.......)).))))))..))))))))).)).)))..))).))))))))

SIMILARITIES

miRBase nlo-mir-7: 2e-29

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-7: 5e-43

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR

references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"