ABOUT THIS RECORDspecies: Bombyx mori
miRNA family: mir-993
source: miRBase, original name: bmo-mir-993a (MI0010626)
Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAAGCTCGTCTCTACAGGTATCT miRNA* CTACCCTGTAGATCCGGGCTTTTG mismatches: 4 bulges: 1 |
pre-miRNA
GGCACATTCGTGATCTACCCTGTAGATCCGGGCTTTTGTAGATTAATTACATCAGAAGCTCGTCTCTACAGGTATCTCACGGCTGGAA
dot-bracket secondary structure
....((..(((((..((((.((((((..((((((((((..............))))))))))..))))))))))..)))))..))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Griffiths-Jones S, Unpublished (2009).,
[2] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
GGCACATTCGTGATCTACCCTGTAGATCCGGGCTTTTGTAGATTAATTACATCAGAAGCTCGTCTCTACAGGTATCTCACGGCTGGAA
dot-bracket secondary structure
....((..(((((..((((.((((((..((((((((((..............))))))))))..))))))))))..)))))..))...
SIMILARITIES| miRBase tca-mir-993: 3e-28 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Griffiths-Jones S, Unpublished (2009).,
[2] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
