ABOUT THIS RECORDspecies: Bombyx mori
miRNA family: miR-2729
source: miRBase, original name: bmo-mir-2729 (MI0012177)
Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTTTATGAGGTCGGTCCAT miRNA* GGAGATCGTCCGCGTGATCT mismatches: 3 bulges: 4 |
pre-miRNA
AGCAAGCATTTATGCTGGAGTGAGTAACAGATTTTATGAGGTCGGTCCATCGTGTTGGAGATCGTCCGCGTGATCTTTTGCCCTCGACTTTCCCTTGCA
dot-bracket secondary structure
.(((((.......(.(.(((.(.((((.(((((..(((.((.(((((((......))))..))).)).)))))))).)))))))).)).....))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, RT-PCR
references
[1] Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J, Genomics. 94:438-444(2009)., "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome"
AGCAAGCATTTATGCTGGAGTGAGTAACAGATTTTATGAGGTCGGTCCATCGTGTTGGAGATCGTCCGCGTGATCTTTTGCCCTCGACTTTCCCTTGCA
dot-bracket secondary structure
.(((((.......(.(.(((.(.((((.(((((..(((.((.(((((((......))))..))).)).)))))))).)))))))).)).....))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, RT-PCR
references
[1] Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J, Genomics. 94:438-444(2009)., "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome"
