ABOUT THIS RECORDspecies: Bombyx mori
miRNA family: mir-2733
source: miRBase, original name: bmo-mir-2733b-1 (MI0012190)
Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACTGGGTGCGTGATGATTGT miRNA* AGTCATCACACTCTCAGTTGATA mismatches: 2 bulges: 1 |
pre-miRNA
TCTCTCTAATATAGTCATCACACTCTCAGTTGATATGTGTAACATTCTATCACTGGGTGCGTGATGATTGTGGTAGAGAT
dot-bracket secondary structure
..((((((.((((((((((((.(.((((((.((((.(((...)))..)))))))))).).)))))))))))).)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J, Genomics. 94:438-444(2009)., "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome"
[2] Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R, BMC Genomics. 11:52(2010)., "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development"
TCTCTCTAATATAGTCATCACACTCTCAGTTGATATGTGTAACATTCTATCACTGGGTGCGTGATGATTGTGGTAGAGAT
dot-bracket secondary structure
..((((((.((((((((((((.(.((((((.((((.(((...)))..)))))))))).).)))))))))))).)))))).
SIMILARITIES| miRBase bmo-mir-2733a-1: 2e-32 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J, Genomics. 94:438-444(2009)., "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome"
[2] Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R, BMC Genomics. 11:52(2010)., "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development"
