ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIRf137
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTGTCGTTGTTGCCGGAGCC miRNA* CTCTGCCGCTCGCCACGCC mismatches: 4 bulges: 2 |
pre-miRNA
CGTTCGTCGTTGCTCTGCCGCTCGCCACGCCTACTAGCGTGTCGTGCTGCTGGTGCACGCTCGCCCATCCTGTTATGTGCTGAGCGCCATTTTCGCTGCT
CACCAGCACGGTACCCTGCTCGCACGTCGCGCTCTGCGTGCTCTGTCTTCGCTACTAGTGTCGTACATATTGTTGAGGCCTCCCCGCGCAGAAGTTCTTC
GTGTCGTTGTTGCCGGAGCCGCGCTCGTG
dot-bracket secondary structure
....((.(((.(((((((.((.((.((((...(((.(((((.((((((((((((((((((((((.(((......))).)).)))))..........))).
.))))))).(((.....))).))))).)))))((((((((....(((((.((.....((((...))))...)).))))).....)))))))))))....)
))).))..)).).)))))).)))..))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CGTTCGTCGTTGCTCTGCCGCTCGCCACGCCTACTAGCGTGTCGTGCTGCTGGTGCACGCTCGCCCATCCTGTTATGTGCTGAGCGCCATTTTCGCTGCT
CACCAGCACGGTACCCTGCTCGCACGTCGCGCTCTGCGTGCTCTGTCTTCGCTACTAGTGTCGTACATATTGTTGAGGCCTCCCCGCGCAGAAGTTCTTC
GTGTCGTTGTTGCCGGAGCCGCGCTCGTG
dot-bracket secondary structure
....((.(((.(((((((.((.((.((((...(((.(((((.((((((((((((((((((((((.(((......))).)).)))))..........))).
.))))))).(((.....))).))))).)))))((((((((....(((((.((.....((((...))))...)).))))).....)))))))))))....)
))).))..)).).)))))).)))..))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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