miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Paullinia cupana var. sorbilis, Citrus clementina



ABOUT THIS RECORD

ID: MNEST000358
species: Citrus aurantium
miRNA family: miR1515
source: miRNEST

Taxonomy by NCBI:
Citrus aurantium Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATTTTTGCGTGCAATGATCC

miRNA*
 ATCATTCACGCAAAAATGATT

mismatches: 0
bulges: 1
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pre-miRNA
 ACGTCTGGGGAAGGTGCTGGTTGCTTCACAATTCCAACTCGTCGATTTGCATCATTTTTGCGTGCAATGATCCCGAATTTGCTCTCTTACTCAACTTTCT
TTTTAATTTACCAATATTCATGTTTATTGGTTTGAAAAATAGGAAAAAAAAATTCTAATTTTTGTTAACGGGGATCTGGATCATTCACGCAAAAATGATT
TGACTCGTGAGTTGGCCTTGTGAAGAGACCAGCGCTATCAATAGGAGG

dot-bracket secondary structure
...((((..((.((((((((((.((((((((..((((((((.(((.(((.((((((((((((((.((((((((.((.....((((.(((..((..(((((
(.((..((.(((((((........)))))))..))..)).))))))..(((((....))))))).))).)))).)).)))))))))))))))))))))).
))).)))))))))))..)))))))).)))))))))).))..))))...


SIMILARITIES
miRBase csi-MIR1515: 8e-78

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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