ABOUT THIS RECORDspecies: Culex quinquefasciatus
miRNA family: mir-9
source: miRBase, original name: cqu-mir-9 (MI0013581)
Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTGGTATTCTAGCTGTAGA miRNA* TAAAGCTTTAGTACCAGAGGTC mismatches: 3 bulges: 0 |
pre-miRNA
ATGCGTATAATTTCCGGCTGAATCTTTGGTATTCTAGCTGTAGAATGTTGAGCTTGTTACGGTATCTTCTAAAGCTTTAGTACCAGAGGTCCAACTGGGA
ATTGCTTGCTG
dot-bracket secondary structure
..(((..((((((((((.((.((((((((((((..((((.(((((.((...(((......))))).))))).))))..)))))))))))).)).))))))
))))..)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
ATGCGTATAATTTCCGGCTGAATCTTTGGTATTCTAGCTGTAGAATGTTGAGCTTGTTACGGTATCTTCTAAAGCTTTAGTACCAGAGGTCCAACTGGGA
ATTGCTTGCTG
dot-bracket secondary structure
..(((..((((((((((.((.((((((((((((..((((.(((((.((...(((......))))).))))).))))..)))))))))))).)).))))))
))))..)))..
SIMILARITIES| miRBase aae-mir-9c: 1e-28 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
