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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST003628
species: Zea mays
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCCAAGGATGACTTGCCGG

miRNA*
 GGCAAGTCTGTCCTTGGCTACA

mismatches: 1
bulges: 1
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pre-miRNA
 TGCCATGTGCTATGAGGTAGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGAACCTGGAGGCGTCTCAGCTTGCTGTGCTGTGGCTTAGAAC
TTAGTCGGCAAGTCTGTCCTTGGCTACACCTAGTTCTCTTCCTCTCGTGTATGGCC

dot-bracket secondary structure
.(((((((((...((((.((((((((((.((.((((((((((((((((((((((...........(((...(((.((((.((...))...)))).))).)
)))))))))))))).)))))))))).))))).))))))).))))..))))))))).


SIMILARITIES
miRBase zma-MIR169c: 4e-72

PMRD zma-miR169c: 4e-72

microPC miR169: 2e-43		UniProt no hits

RFAM MIR169_2: 7e-62		most similar mature miRNAs

Identical with: zma-miR169r from PMRD (MNEST055020)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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