miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Drosophila melanogaster, Drosophila simulans, Drosophila sechellia, Drosophila auraria, Drosophila pseudoobscura, Drosophila willistoni, Drosophila ananassae, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Drosophila mojavensis, Drosophila yakuba



ABOUT THIS RECORD

ID: MNEST036487
species: Drosophila melanogaster
source: miRBase, original name: dme-mir-956 (MI0005810)

Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTGTTTGGAATGGTCTCGTTAGCT

miRNA*
 TTTCGAGACCACTCTAATCCATTG

mismatches: 3
bulges: 2
View larger
pre-miRNA
 GATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCGGCTCACTGGCCCAAATGCAGTTTGCCCGGAGACGCCGGTTAACCCA
GCACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTT

dot-bracket secondary structure
....(((.(.(((.(((((.((((((((..(((((.((.((...((.(((((.((...((((((......((.....))..(....)))))))...)).)
))))))..)).))))))).)))))))).)))))..))).).)))....


SIMILARITIES
miRBase dme-mir-956: 2e-80

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC, Genome Res. 17:1850-1864(2007)., "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"



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