ABOUT THIS RECORDspecies: Drosophila melanogaster
source: miRBase, original name: dme-mir-4909 (MI0017704)
Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGTATCCGGTCTTCATTTTAG miRNA* AGGTTGAAATCGGATACAACTA mismatches: 3 bulges: 1 |
pre-miRNA
GTAGGTTGAAATCGGATACAACTAAAAGTTATTTTTAATTGTATCCGGTCTTCATTTTAG
dot-bracket secondary structure
.((((.(((((((((((((((.((((((...)))))).))))))))))).)))).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC, Genome Res. 21:286-300(2011)., "Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans"
GTAGGTTGAAATCGGATACAACTAAAAGTTATTTTTAATTGTATCCGGTCTTCATTTTAG
dot-bracket secondary structure
.((((.(((((((((((((((.((((((...)))))).))))))))))).)))).)))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC, Genome Res. 21:286-300(2011)., "Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans"
