ABOUT THIS RECORDspecies: Citrus reticulata
miRNA family: miR3952
source: miRNEST
Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGGGCCTTTCTAGAGCAC miRNA* GCTGTAGAAAGTCCCTTCACC mismatches: 2 bulges: 0 |
pre-miRNA
GCTTATGCATATTCTTTCATGTGCTGTAGAAAGTCCCTTCACCCTCGGAAACGTCACCATGGACTGGAACTGGGAGCGAAGAAAGCGAGATCTGATGGTT
GGCATTGAAGGTGGCAAGCTGCAGAAGAAAGATGACGTTTTCAAAGTTGAAGGGCCTTTCTAGAGCACTGGAATCCATTCATAATTA
dot-bracket secondary structure
..(((((.(((((((.....(((((.(((((((.(((((((.....(((((((((((((.....)))..((....((.......)).)).((((.(((((
.((..........)).))))))))).......)))))))))).....))))))).))))))).))))).)))))..)).)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCTTATGCATATTCTTTCATGTGCTGTAGAAAGTCCCTTCACCCTCGGAAACGTCACCATGGACTGGAACTGGGAGCGAAGAAAGCGAGATCTGATGGTT
GGCATTGAAGGTGGCAAGCTGCAGAAGAAAGATGACGTTTTCAAAGTTGAAGGGCCTTTCTAGAGCACTGGAATCCATTCATAATTA
dot-bracket secondary structure
..(((((.(((((((.....(((((.(((((((.(((((((.....(((((((((((((.....)))..((....((.......)).)).((((.(((((
.((..........)).))))))))).......)))))))))).....))))))).))))))).))))).)))))..)).)))))...
SIMILARITIES| miRBase csi-MIR3952: 1e-57 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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