ABOUT THIS RECORDspecies: Drosophila melanogaster
source: miRBase, original name: dme-mir-4973 (MI0017759)
Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAACACTCACACCACGGCAA miRNA* GTCGTCGTTGCGTGTTGTAGG mismatches: 4 bulges: 1 |
pre-miRNA
CTCGTTCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAGCTCCGTTTGGACTGCTCCTCCTCCAACTACTACTGCGGCCGCTGCTGCTGCTGC
TGCGGCTGCTGCATCCGCCTGCAACCTGCAACACTCACACCACGGCAACAG
dot-bracket secondary structure
........(((((.((((.(((((((((((.((..(((.....(((((((....)))..))))................((((((.(((((.((....))
.))))).))))))...))).)).))))))))))).)).)).))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC, Genome Res. 21:203-215(2011)., "Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence"
CTCGTTCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAGCTCCGTTTGGACTGCTCCTCCTCCAACTACTACTGCGGCCGCTGCTGCTGCTGC
TGCGGCTGCTGCATCCGCCTGCAACCTGCAACACTCACACCACGGCAACAG
dot-bracket secondary structure
........(((((.((((.(((((((((((.((..(((.....(((((((....)))..))))................((((((.(((((.((....))
.))))).))))))...))).)).))))))))))).)).)).))))).....
SIMILARITIES| miRBase dme-mir-4973: 2e-43 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC, Genome Res. 21:203-215(2011)., "Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence"
