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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST003673
species: Zea mays
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGCTCGAGG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TTACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCAGAAACATACAGATCTCATCGGTCTAGGTTCTTGTCGATCTCGGACCAGGCTTCATTCCCCTCAA
GTGG

dot-bracket secondary structure
.(((((.((((((((((..((((((.(((((((((((.(((....(((((.....)))))..))).))))..))))))).))))))..))))))))))))
))).


SIMILARITIES
miRBase zma-MIR166e: 3e-44

PMRD zma-miR166p: 5e-49

microPC miR166: 5e-43		UniProt no hits

RFAM mir-166: 1e-46		most similar mature miRNAs

Identical with: miR166 from microPC (MNEST046839)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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