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Species belonging to selected taxon:

Bicyclus anynana, Drosophila melanogaster, Bombyx mori, Aedes aegypti, Acyrthosiphon pisum, Culex quinquefasciatus, Anopheles gambiae, Dendroctonus ponderosae, Nasonia vitripennis, Drosophila simulans, Aphis gossypii, Glossina morsitans morsitans, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Locusta migratoria, Phlebotomus papatasi, Drosophila sechellia, Drosophila auraria, Nilaparvata lugens, Antheraea assama, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Nasonia giraulti, Bombus terrestris, Myzus persicae, Drosophila willistoni, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Spodoptera littoralis, Peregrinus maidis, Samia cynthia ricini, Drosophila mojavensis, Danaus plexippus, Cochliomyia hominivorax, Anopheles stephensi, Diabrotica virgifera virgifera, Haematobia irritans irritans, Papilio xuthus, Onychiurus arcticus, Rhodnius prolixus, Polypedilum vanderplanki, Ostrinia nubilalis, Laupala kohalensis, Frankliniella occidentalis, Trichoplusia ni, Gryllus bimaculatus, Drosophila yakuba, Epiphyas postvittana, Apis mellifera, Tribolium castaneum



ABOUT THIS RECORD

ID: MNEST036748
species: Drosophila melanogaster
miRNA family: mir-iab-8
source: miRBase, original name: dme-mir-iab-8 (MI0005805)

Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGATACATTCAGTATACGTTTA

miRNA*
 TTACGTATACTGAAGGTATACCGG

mismatches: 2
bulges: 2
View larger
pre-miRNA
 ATCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGA

dot-bracket secondary structure
)(((((..((((((((((((.((((.((.((..(....)..)).)))))).)))))))))))).)))))


SIMILARITIES
miRBase der-mir-iab-4: 4.0E-33

PMRD no hits

microPC no hits		UniProt no hits

RFAM 4mir-iab-4: 2.0E-29

Identical with: der-mir-iab-4 from miRBase (MNEST036231), dya-mir-iab-4 from miRBase , dsi-mir-iab-4 from miRBase , dse-mir-iab-4 from miRBase , dya-mir-iab-4 from miRBase , dme-mir-iab-4 from miRBase , dsi-mir-iab-8 from miRBase

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, in-situ
deep sequencing data evidence

references
[1] Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC, Genome Res. 17:1850-1864(2007)., "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"
[2] Stark A, Bushati N, Jan CH, Kheradpour P, Hodges E, Brennecke J, Bartel DP, Cohen SM, Kellis M, Genes Dev. 22:8-13(2008)., "A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands"



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