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Species belonging to selected taxon:
Agrostis stolonifera
,
Allium cepa
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Dioscorea alata
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST003675
species:
Zea mays
miRNA family:
miR396e
source:
miRNEST
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTTCAAGAAAGCCCATGGAAA
miRNA*
TCCACAGGCTTTCTTGAACTG
mismatches:
2
bulges:
0
View larger
pre-miRNA
CGGGCATGCTT
TCCACAGGCTTTCTTGAACTG
TGAACTCGTGGGCGTGGTGGTGGTGGTGCTGGTGCTGGGTGTGTGGGACGGAATGATTGGCTCCTCCC
AGTCCCAGTCCCAGTCCCACCCACCAATTCTCTTCCCCCCGACCGGCCGTGAATTGAATTGAATCGAATCGCATCGCTGAGCTTCCCCCCGGCTCGCTCA
CGCGACCTGTTGATG
GTTCAAGAAAGCCCATGGAAA
CCATGCAG
dot-bracket secondary structure
...(((((.((
((((..(((((((((((((((
(.(((.(((((((.((((((..((((.(((((.((((((....(((((.(((.........)))))))
)..)))))).))))).))))))))))..((..........))..(((.((((.((((......)))).))))...)))(((((.......))))))))))
))......))).)))
)))))))))))))..))))))
.)))))..
SIMILARITIES
miRBase
zma-MIR396d
:
0.000000000000004
PMRD
zma-miR396m
:
3e-86
microPC
miR396
:
0.00000001
UniProt
no hits
RFAM
MIR396: 1e-89
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record