miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Drosophila melanogaster, Bombyx mori, Aedes aegypti, Aplysia californica, Lottia gigantea, Alvinella pompejana, Ixodes scapularis, Litopenaeus vannamei, Lepeophtheirus salmonis, Acyrthosiphon pisum, Culex quinquefasciatus, Anopheles gambiae, Dendroctonus ponderosae, Daphnia pulex, Nasonia vitripennis, Drosophila simulans, Helobdella robusta, Petrolisthes cinctipes, Aphis gossypii, Tetranychus urticae, Glossina morsitans morsitans, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Crassostrea gigas, Biomphalaria glabrata, Rhipicephalus microplus, Locusta migratoria, Phlebotomus papatasi, Mytilus californianus, Penaeus monodon, Drosophila sechellia, Drosophila auraria, Artemia franciscana, Nilaparvata lugens, Euprymna scolopes, Antheraea assama, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Caligus rogercresseyi, Nasonia giraulti, Homarus americanus, Bombus terrestris, Myzus persicae, Drosophila willistoni, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Spodoptera littoralis, Peregrinus maidis, Samia cynthia ricini, Lumbricus rubellus, Drosophila mojavensis, Danaus plexippus, Rhipicephalus appendiculatus, Cochliomyia hominivorax, Anopheles stephensi, Diabrotica virgifera virgifera, Tubifex tubifex, Haematobia irritans irritans, Eriocheir sinensis, Papilio xuthus, Onychiurus arcticus, Rhodnius prolixus, Carcinus maenas, Polypedilum vanderplanki, Ostrinia nubilalis, Lernaeocera branchialis, Caligus clemensi, Laupala kohalensis, Frankliniella occidentalis, Daphnia magna, Gammarus pulex, Trichoplusia ni, Lymnaea stagnalis, Calanus finmarchicus, Gryllus bimaculatus, Drosophila yakuba, Epiphyas postvittana, Callinectes sapidus, Peripatopsis sedgwicki, Fenneropenaeus chinensis, Apis mellifera, Tribolium castaneum

ABOUT THIS RECORD

ID: MNEST036897
species: Drosophila pseudoobscura
miRNA family: bantam
source: miRBase, original name: dps-bantam (MI0001287)

Taxonomy by NCBI:
Drosophila pseudoobscura pseudoobscura subgroup obscura group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGAGATCATTTTGAAAGCTGATT

miRNA*
CCGGTTTTCGATTTGGTTTGACT

mismatches: 4
bulges: 0

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pre-miRNA
ATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTTTTTATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAA

dot-bracket secondary structure
..(((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).)))))))))

SIMILARITIES

miRBase dan-bantam: 9e-41

PMRD no hits

microPC no hits

UniProt no hits

RFAM bantam: 2e-35

Identical with: dpe-bantam from miRBase (MNEST036821)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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