miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Drosophila melanogaster, Drosophila simulans, Drosophila sechellia, Drosophila auraria, Drosophila pseudoobscura, Drosophila willistoni, Drosophila ananassae, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Drosophila mojavensis, Drosophila yakuba



ABOUT THIS RECORD

ID: MNEST037209
species: Drosophila simulans
miRNA family: mir-2
source: miRBase, original name: dsi-mir-13b-1 (MI0009421)

Taxonomy by NCBI:
Drosophila simulans melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATCACAGCCATTTTGACGAGT

miRNA*
TCGTTAAAATGTTTGTGAACTTATG

mismatches: 3
bulges: 3

View larger
pre-miRNA
CCATGTCGTTAAAATGTTTGTGAACTTATGTATTCGCAATCATATCACAGCCATTTTGACGAGTTTGG

dot-bracket secondary structure
(((..(((((((((((.((((((...((((..........)))))))))).)))))))))))...)))


SIMILARITIES
miRBase der-mir-13b-1: 4e-33

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-2: 3e-31

Identical with: der-mir-13b-1 from miRBase (MNEST036173)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie, Nature. 450:203-218(2007)., "Evolution of genes and genomes on the Drosophila phylogeny"




Liczniki na strone;