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Species belonging to selected taxon:

Drosophila melanogaster, Drosophila simulans, Glossina morsitans morsitans, Drosophila sechellia, Drosophila auraria, Drosophila pseudoobscura, Teleopsis dalmanni, Drosophila willistoni, Drosophila ananassae, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Drosophila mojavensis, Cochliomyia hominivorax, Haematobia irritans irritans, Drosophila yakuba



ABOUT THIS RECORD

ID: MNEST037340
species: Drosophila virilis
miRNA family: mir-9
source: miRBase, original name: dvi-mir-9a (MI0009495)

Taxonomy by NCBI:
Drosophila virilis virilis group Drosophila Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTTTGGTTATCTAGCTGTATGA

miRNA*
 ATAAAGCTAGCTTACCGAAGTTA

mismatches: 5
bulges: 0
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pre-miRNA
 ACTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTA

dot-bracket secondary structure
)..((((((.(((((((...((((((.(((((((........)).))))).))))))...))))))).))))))..


SIMILARITIES
miRBase dan-mir-9a: 3.0E-37

PMRD no hits

microPC no hits		UniProt no hits

RFAM 9mir-9: 1.0E-27

Identical with: dps-mir-9a from miRBase (MNEST036913), der-mir-9a from miRBase , dgr-mir-9a from miRBase , dmo-mir-9a from miRBase , dsi-mir-9a from miRBase , dse-mir-9a from miRBase , dme-mir-9a from miRBase , dpe-mir-9a from miRBase , dan-mir-9a from miRBase , dya-mir-9a-1 from miRBase , dya-mir-9a-2 from miRBase

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie, Nature. 450:203-218(2007)., "Evolution of genes and genomes on the Drosophila phylogeny"



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