ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTCGTCTGGTTCAAGT mismatches: 3 bulges: 1 |
pre-miRNA
TATGAAGCTACTGCTTCTGAGTGGAATGTTCGTCTGGTTCAAGTCTTGCTTTGCGATTTGAGAGATGATCCATGCTTGCATGTGTAGTTTTTTTACCTTG
GATCTGCAAAATCTCGGACCAGGCTTCATTCCCCTTAGGAATAGCTTCAAAATAATACCGCC
dot-bracket secondary structure
..((((((((....(((((((.((((((...(((((((((.((......(((((((((((((((((.((.((((....)))).)).))))......))))
)))).)))))..)).)))))))))..)))))).))))))).)))))))).............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TATGAAGCTACTGCTTCTGAGTGGAATGTTCGTCTGGTTCAAGTCTTGCTTTGCGATTTGAGAGATGATCCATGCTTGCATGTGTAGTTTTTTTACCTTG
GATCTGCAAAATCTCGGACCAGGCTTCATTCCCCTTAGGAATAGCTTCAAAATAATACCGCC
dot-bracket secondary structure
..((((((((....(((((((.((((((...(((((((((.((......(((((((((((((((((.((.((((....)))).)).))))......))))
)))).)))))..)).)))))))))..)))))).))))))).)))))))).............
SIMILARITIES| miRBase zma-MIR166b: 0.000000000000009 PMRD zma-miR166b: 0.000000000000009 microPC miR166: 9e-49 | UniProt no hits RFAM mir-166: 2e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
