miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST003761
species: Zea mays
miRNA family: MIR319
source: miRNEST

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGATTCAAGGGAGCTCCTC

miRNA*
 AGAGCTCCCTTCGATCCAATC

mismatches: 2
bulges: 0
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pre-miRNA
 CGATCGATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGCTGCAGCTGCCGGTTCATGGATACCTCTCTGGTGCAGCAATGGCCGAGA
TGCTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGACGAACCCACCATCATCTTTCCCTCGTGCTTGGATTCAAGGGAGCTCCTCTCTGTCTC

dot-bracket secondary structure
.(((.((..((.((((((((((.(((((((..((.(((((((((((((.((.((...((.((((.(((((.((((((....(((((((....(((.....
.)))...))))))).....)))))).))))).)))).)).))..)).))))....))))))))).)).))))))).)))))))))).)))).)))..


SIMILARITIES
miRBase zma-MIR159d: 5e-100

PMRD zma-miR159d: 5e-100

microPC miR319: 6e-75		UniProt no hits

RFAM MIR159: 5e-79		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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