miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Drosophila melanogaster, Bombyx mori, Aedes aegypti, Culex quinquefasciatus, Anopheles gambiae, Dendroctonus ponderosae, Nasonia vitripennis, Drosophila simulans, Glossina morsitans morsitans, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Phlebotomus papatasi, Drosophila sechellia, Drosophila auraria, Antheraea assama, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Nasonia giraulti, Bombus terrestris, Drosophila willistoni, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Spodoptera littoralis, Samia cynthia ricini, Drosophila mojavensis, Danaus plexippus, Cochliomyia hominivorax, Anopheles stephensi, Diabrotica virgifera virgifera, Haematobia irritans irritans, Papilio xuthus, Polypedilum vanderplanki, Ostrinia nubilalis, Trichoplusia ni, Drosophila yakuba, Epiphyas postvittana, Apis mellifera, Tribolium castaneum

ABOUT THIS RECORD

ID: MNEST037638
species: Nasonia vitripennis
miRNA family: mir-12
source: miRBase, original name: nvi-mir-12 (MI0014731)

Taxonomy by NCBI:
Nasonia vitripennis Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGAGTATTACATCAGGTACTGGT

miRNA*
CAGTACTTGTGTTATACTTGCG

mismatches: 3
bulges: 1

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pre-miRNA
AAGAGGAGGGTGTGAGTATTACATCAGGTACTGGTGTCTTTTTTTCAGCGACCAGTACTTGTGTTATACTTGCGTTCGCTTCTT

dot-bracket secondary structure
((((((.(..((..(((((.(((.(((((((((((((..........)).)))))))))))))).)))))..))..).))))))

SIMILARITIES

miRBase nlo-mir-12: 5e-18

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-12: 1e-21

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van, Science. 327:343-348(2010)., "Functional and evolutionary insights from the genomes of three parasitoid Nasonia species"