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Species belonging to selected taxon:

Bicyclus anynana, Drosophila melanogaster, Bombyx mori, Aedes aegypti, Culex quinquefasciatus, Anopheles gambiae, Dendroctonus ponderosae, Nasonia vitripennis, Drosophila simulans, Glossina morsitans morsitans, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Phlebotomus papatasi, Drosophila sechellia, Drosophila auraria, Antheraea assama, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Nasonia giraulti, Bombus terrestris, Drosophila willistoni, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Spodoptera littoralis, Samia cynthia ricini, Drosophila mojavensis, Danaus plexippus, Cochliomyia hominivorax, Anopheles stephensi, Diabrotica virgifera virgifera, Haematobia irritans irritans, Papilio xuthus, Polypedilum vanderplanki, Ostrinia nubilalis, Trichoplusia ni, Drosophila yakuba, Epiphyas postvittana, Apis mellifera, Tribolium castaneum



ABOUT THIS RECORD

ID: MNEST037681
species: Tribolium castaneum
miRNA family: bantam
source: miRBase, original name: tca-bantam (MI0010584)

Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTGGTTTTCACAGTGATTTGACAG

miRNA*
 GAGATCATTGTGAAAGCTGATT

mismatches: 2
bulges: 2
View larger
pre-miRNA
 TCAGCGAGACGAAACTGGTTTTCACAGTGATTTGACAGATATATTTGATTCTGAGATCATTGTGAAAGCTGATTTTGTTCA

dot-bracket secondary structure
.....(((.(((((..(((((((((((((((((..((((..........)))))))))))))))))))))..)))))))).


SIMILARITIES
miRBase tca-bantam: 9e-41

PMRD no hits

microPC no hits		UniProt no hits

RFAM bantam: 2e-39

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
[2] Griffiths-Jones S, Unpublished (2009).,



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