ABOUT THIS RECORDspecies: Tribolium castaneum
miRNA family: mir-1
source: miRBase, original name: tca-mir-1 (MI0008892)
Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGTGCTTCCTTACTTCCCATA miRNA* TGGAATGTAAAGAAGTATGGAG mismatches: 4 bulges: 0 |
pre-miRNA
TTCGCGAGTTCCGTGCTTCCTTACTTCCCATAGTGCTTTAAACGTATGGAATGTAAAGAAGTATGGAGCGAA
dot-bracket secondary structure
.......((((((((((((.((((...(((((((.......)).)))))...)))).))))))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Singh J, Nagaraju J, Insect Mol Biol. 17:427-436(2008)., "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)"
[2] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
TTCGCGAGTTCCGTGCTTCCTTACTTCCCATAGTGCTTTAAACGTATGGAATGTAAAGAAGTATGGAGCGAA
dot-bracket secondary structure
.......((((((((((((.((((...(((((((.......)).)))))...)))).))))))))))))...
SIMILARITIES| miRBase tca-mir-1: 2e-35 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 1e-33 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Singh J, Nagaraju J, Insect Mol Biol. 17:427-436(2008)., "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)"
[2] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
