miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Drosophila melanogaster, Bombyx mori, Aedes aegypti, Acyrthosiphon pisum, Culex quinquefasciatus, Anopheles gambiae, Dendroctonus ponderosae, Nasonia vitripennis, Drosophila simulans, Aphis gossypii, Glossina morsitans morsitans, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Locusta migratoria, Phlebotomus papatasi, Drosophila sechellia, Drosophila auraria, Nilaparvata lugens, Antheraea assama, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Nasonia giraulti, Bombus terrestris, Myzus persicae, Drosophila willistoni, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Spodoptera littoralis, Peregrinus maidis, Samia cynthia ricini, Drosophila mojavensis, Danaus plexippus, Cochliomyia hominivorax, Anopheles stephensi, Diabrotica virgifera virgifera, Haematobia irritans irritans, Papilio xuthus, Rhodnius prolixus, Polypedilum vanderplanki, Ostrinia nubilalis, Laupala kohalensis, Frankliniella occidentalis, Trichoplusia ni, Gryllus bimaculatus, Drosophila yakuba, Epiphyas postvittana, Apis mellifera, Tribolium castaneum

ABOUT THIS RECORD

ID: MNEST037689
species: Tribolium castaneum
miRNA family: mir-2
source: miRBase, original name: tca-mir-2b (MI0008895)

Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GCTCATCATCTGGTTGTG

miRNA*
CAGCCAGCTTTGATGAGCGC

mismatches: 1
bulges: 2

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pre-miRNA
GGTGTAGGCTTTCGCTCATCATCTGGTTGTGAAATGTGAATTTATATCATATCACAGCCAGCTTTGATGAGCGCAAGAGTGCACT

dot-bracket secondary structure
((((((..(((.(((((((((.((((((((((..(((((.......)))))))))))))))...))))))))).)))..))))))

SIMILARITIES

miRBase tca-mir-2b: 4e-43

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-2: 6e-30

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references
[1] Singh J, Nagaraju J, Insect Mol Biol. 17:427-436(2008)., "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)"

[2] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"