ABOUT THIS RECORDspecies: Tribolium castaneum
miRNA family: mir-9
source: miRBase, original name: tca-mir-9a (MI0010583)
Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATAAAGCTAGGTTACCGGAG miRNA* TTGGTTATCTAGCTGTATGA mismatches: 2 bulges: 0 |
pre-miRNA
CTGATATTTTCTTTGGTTATCTAGCTGTATGAGTATTGTTTAATAACATCATAAAGCTAGGTTACCGGAGTTAAAACCAGT
dot-bracket secondary structure
(((...((..(((((((.((((((((.(((((.((((....))))...))))).)))))))).)))))))..))...))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
[2] Griffiths-Jones S, Unpublished (2009).,
CTGATATTTTCTTTGGTTATCTAGCTGTATGAGTATTGTTTAATAACATCATAAAGCTAGGTTACCGGAGTTAAAACCAGT
dot-bracket secondary structure
(((...((..(((((((.((((((((.(((((.((((....))))...))))).)))))))).)))))))..))...))).
SIMILARITIES| miRBase tca-mir-9a: 9e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 2e-29 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
[2] Griffiths-Jones S, Unpublished (2009).,
