ABOUT THIS RECORDspecies: Tribolium castaneum
source: miRBase, original name: tca-mir-9c (MI0016304)
Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGCGTCTAAGTCGCCAAGATTTG miRNA* CTTCTTTGGTGATCTAGCCGTGTGA mismatches: 5 bulges: 1 |
pre-miRNA
TGATTTTGCTAACGCGTTATCACTTCTTTGGTGATCTAGCCGTGTGAATTATTTTTGAAATCACGCGTCTAAGTCGCCAAGATTTGATGATGTGTCTAAC
AACTGGA
dot-bracket secondary structure
.....(((.(((((((((((((..((((.(((((..(((.(((((((.((.......)).))))))).)))..)))))))))..))))))))))).)).)
)).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
TGATTTTGCTAACGCGTTATCACTTCTTTGGTGATCTAGCCGTGTGAATTATTTTTGAAATCACGCGTCTAAGTCGCCAAGATTTGATGATGTGTCTAAC
AACTGGA
dot-bracket secondary structure
.....(((.(((((((((((((..((((.(((((..(((.(((((((.((.......)).))))))).)))..)))))))))..))))))))))).)).)
)).....
SIMILARITIES| miRBase tca-mir-9c: 4e-56 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
