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Species belonging to selected taxon:
Dendroctonus ponderosae
,
Diabrotica virgifera virgifera
,
Tribolium castaneum
ABOUT THIS RECORD
ID:
MNEST037775
species:
Tribolium castaneum
source:
miRBase, original name:
tca-mir-279c
(
MI0016312
)
Taxonomy by NCBI:
Tribolium castaneum
Tribolium
Tenebrionidae
Tenebrionoidea
Cucujiformia
Polyphaga
Coleoptera
Endopterygota
Neoptera
Pterygota
Dicondylia
Insecta
Hexapoda
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGGGTGTTCGTTTCGAGTCACA
miRNA*
TGACTAGATCGAACATTCGCT
mismatches:
2
bulges:
1
View larger
pre-miRNA
TTTCGCCGCTTAAATTCATATTTTTTT
CGGGTGTTCGTTTCGAGTCACA
TTGTGATTGATTTTG
TGACTAGATCGAACATTCGCT
CGAAGTATGGAAAAA
TCCGCGGGACTT
dot-bracket secondary structure
..((.((((.....((((((((((...
((((((((((..((.(((((((
..((.....))..))
))))).)).))))))))))..
.))))))))))....
...))))))...
SIMILARITIES
miRBase
tca-mir-279c
:
1e-46
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
SOLID
references
[
1
] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S,
Genome Biol Evol. 2:686-696(2010).
,
"Functional shifts in insect microRNA evolution"