ABOUT THIS RECORDspecies: Tribolium castaneum
miRNA family: mir-2796
source: miRBase, original name: tca-mir-2796 (MI0016303)
Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTAGGCCGGCGGAAACTACTTGC miRNA* AGGGGTTTCTTTCGGCCTCCAG mismatches: 2 bulges: 1 |
pre-miRNA
ATCGAGCTTTCGGTGCAGAAGCCGCTATTAACGTGGTGACGCAAGAGTAGGGGTTTCTTTCGGCCTCCAGCGGATAATAAAGAGTTGTAGGCCGGCGGAA
ACTACTTGCTTTTACGTTGCATTACCTTCGCTGCGGCTTCCCGTCAATGATGCGTTTT
dot-bracket secondary structure
.....((..(((.(((.((((((((.......(((((((((.((((((((((((((((.(((((((.((((............)))).))))))).))))
))).))))))))).)))..)))))).......))))))))..).)).))).)).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
ATCGAGCTTTCGGTGCAGAAGCCGCTATTAACGTGGTGACGCAAGAGTAGGGGTTTCTTTCGGCCTCCAGCGGATAATAAAGAGTTGTAGGCCGGCGGAA
ACTACTTGCTTTTACGTTGCATTACCTTCGCTGCGGCTTCCCGTCAATGATGCGTTTT
dot-bracket secondary structure
.....((..(((.(((.((((((((.......(((((((((.((((((((((((((((.(((((((.((((............)))).))))))).))))
))).))))))))).)))..)))))).......))))))))..).)).))).)).....
SIMILARITIES| miRBase tca-mir-2796: 2e-86 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
