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Species belonging to selected taxon:
Amborella trichopoda
ABOUT THIS RECORD
ID:
MNEST000038
species:
Amborella trichopoda
miRNA family:
miR156a
source:
miRNEST
Taxonomy by NCBI:
Amborella trichopoda
Amborella
Amborellaceae
Amborellales
basal Magnoliophyta
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTCACTTCTCTCTCTTTCAA
miRNA*
CTAGAGAGAGAATGGAGGAG
mismatches:
5
bulges:
1
View larger
pre-miRNA
TTGGTATAACTTCAAAGCCTC
TCTCACTTCTCTCTCTTTCAA
TCACGTGCGTTGGGTTTCTTCCTTTGTTAATCAAACTGAGAAATCTTGGGTT
CTAGAG
AGAGAATGGAGGAG
GAAGAAGGGGAAGAGTAT
dot-bracket secondary structure
.........((((....((((
.(((..((((((((((...((
((.........(((((((((..((((.....))))..)))))))))..))))
..))))
))))))..))))))
)..))))...........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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