miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Tribolium castaneum



ABOUT THIS RECORD

ID: MNEST038036
species: Tribolium castaneum
source: miRBase, original name: tca-mir-3881 (MI0016377)

Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCTTTAGGGATCTTTAATTTCTCGG

miRNA*
GAGTTTAAATTATGTTGAGTCTTTCCGATAGCGAT

mismatches: 4
bulges: 9

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pre-miRNA
ACGCAGACTCTTCGAGTTTAAATTATGTTGAGTCTTTCCGATAGCGATCTTTGCTTTAGGGATCTTTAATTTCTCGGATGTCTTTTC

dot-bracket secondary structure
....((((..((((((...((((((....(((...((((...(((((...)))))...)))).))))))))))))))).))))....


SIMILARITIES
miRBase tca-mir-3881: 3e-44

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references

[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"




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