ABOUT THIS RECORDspecies: Tribolium castaneum
source: miRBase, original name: tca-mir-3898 (MI0016398)
Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGAACCGGGATGTTACTT miRNA* TTGCTGTACCGGCTCATAGC mismatches: 6 bulges: 2 |
pre-miRNA
GACCTTGCGATTGCTGTACCGGCTCATAGCATGTTTAATTATCTGCGCGCTATTGATGGAGAAGTTGTAATTATGAACCGGGATGTTACTTGCATGCAG
dot-bracket secondary structure
.....(((((..((....((((.((((((......(((((.(((.((((....)).)).))))))))...)))))).))))...))...))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
GACCTTGCGATTGCTGTACCGGCTCATAGCATGTTTAATTATCTGCGCGCTATTGATGGAGAAGTTGTAATTATGAACCGGGATGTTACTTGCATGCAG
dot-bracket secondary structure
.....(((((..((....((((.((((((......(((((.(((.((((....)).)).))))))))...)))))).))))...))...))))).....
SIMILARITIES| miRBase tca-mir-3898: 2e-51 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
