ABOUT THIS RECORDspecies: Brugia malayi
miRNA family: mir-34
source: miRBase, original name: bma-mir-34 (MI0013327)
Taxonomy by NCBI:
Brugia malayi Brugia Onchocercidae Filarioidea Spirurida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCAGTGTGGTTAGCTGGTTGT miRNA* AACGGCTATCATCACTGCCGTC mismatches: 0 bulges: 3 |
pre-miRNA
CCAAATACGGGGATTTACCGGGTGGCAGTGTGGTTAGCTGGTTGTCAGCATATCGGACAACGGCTATCATCACTGCCGTCCTGGTTTTCCTAAAGTTCAG
CATCTTCCTGT
dot-bracket secondary structure
......((.((((...((((((((((((((((((.(((((.(((((.........)))))))))))))).)))))))).))))))..))))...))....
...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"
CCAAATACGGGGATTTACCGGGTGGCAGTGTGGTTAGCTGGTTGTCAGCATATCGGACAACGGCTATCATCACTGCCGTCCTGGTTTTCCTAAAGTTCAG
CATCTTCCTGT
dot-bracket secondary structure
......((.((((...((((((((((((((((((.(((((.(((((.........)))))))))))))).)))))))).))))))..))))...))....
...........
SIMILARITIES| miRBase tca-mir-34: 0.0000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-449: 6e-43 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"
