miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Mus musculus, Sus scrofa, Bos taurus, Danio rerio, Ciona intestinalis, Rattus norvegicus, Drosophila melanogaster, Xenopus laevis, Oryzias latipes, Gallus gallus, Salmo salar, Caenorhabditis elegans, Canis lupus familiaris, Ictalurus punctatus, Ovis aries, Branchiostoma floridae, Bombyx mori, Aedes aegypti, Oncorhynchus mykiss, Gasterosteus aculeatus, Pimephales promelas, Aplysia californica, Lottia gigantea, Gadus morhua, Alvinella pompejana, Schistosoma mansoni, Ixodes scapularis, Macaca fascicularis, Litopenaeus vannamei, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Paracentrotus lividus, Ictalurus furcatus, Lepeophtheirus salmonis, Homo sapiens, Acyrthosiphon pisum, Culex quinquefasciatus, Saccoglossus kowalevskii, Anopheles gambiae, Dendroctonus ponderosae, Daphnia pulex, Nasonia vitripennis, Strongylocentrotus purpuratus, Petromyzon marinus, Drosophila simulans, Oreochromis niloticus, Molgula tectiformis, Schistosoma japonicum, Helobdella robusta, Petrolisthes cinctipes, Taeniopygia guttata, Aphis gossypii, Ciona savignyi, Ancylostoma caninum, Tetranychus urticae, Glossina morsitans morsitans, Peromyscus maniculatus bairdii, Fundulus heteroclitus, Choristoneura fumiferana, Sparus aurata, Spodoptera frugiperda, Halocynthia roretzi, Heliothis virescens, Crassostrea gigas, Patiria pectinifera, Ascaris suum, Dicentrarchus labrax, Biomphalaria glabrata, Heterorhabditis bacteriophora, Rhipicephalus microplus, Brachionus plicatilis, Pongo abelii, Locusta migratoria, Phlebotomus papatasi, Mytilus californianus, Penaeus monodon, Ursus americanus, Drosophila sechellia, Drosophila auraria, Artemia franciscana, Pristionchus pacificus, Nilaparvata lugens, Equus caballus, Dissostichus mawsoni, Osmerus mordax, Euprymna scolopes, Antheraea assama, Drosophila pseudoobscura, Oryctolagus cuniculus, Macaca nemestrina, Anoplopoma fimbria, Cyprinus carpio, Teleopsis dalmanni, Lutzomyia longipalpis, Caenorhabditis japonica, Esox lucius, Squalus acanthias, Caligus rogercresseyi, Leucoraja erinacea, Taenia solium, Nasonia giraulti, Homarus americanus, Caenorhabditis brenneri, Bombus terrestris, Rana catesbeiana, Myzus persicae, Strongyloides ratti, Drosophila willistoni, Brugia malayi, Takifugu rubripes, Cynops pyrrhogaster, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Eptatretus burgeri, Sebastes caurinus, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Misgurnus anguillicaudatus, Perca flavescens, Paralabidochromis chilotes, Drosophila grimshawi, Ceratitis capitata, Hippoglossus hippoglossus, Spodoptera littoralis, Peregrinus maidis, Ambystoma tigrinum tigrinum, Meloidogyne incognita, Caenorhabditis remanei, Samia cynthia ricini, Lumbricus rubellus, Cavia porcellus, Drosophila mojavensis, Danaus plexippus, Bos indicus, Rhipicephalus appendiculatus, Cochliomyia hominivorax, Rutilus rutilus, Anopheles stephensi, Diabrotica virgifera virgifera, Meleagris gallopavo, Trichinella pseudospiralis, Tubifex tubifex, Haematobia irritans irritans, Eriocheir sinensis, Papilio xuthus, Onychiurus arcticus, Lonchura striata domestica, Poecilia reticulata, Rhodnius prolixus, Carcinus maenas, Bos sp., Polypedilum vanderplanki, Onchocerca volvulus, Ostrinia nubilalis, Lernaeocera branchialis, Macropus eugenii, Caligus clemensi, Peromyscus polionotus subgriseus, Nippostrongylus brasiliensis, Laupala kohalensis, Oncorhynchus tshawytscha, Frankliniella occidentalis, Capra hircus, Daphnia magna, Paralichthys olivaceus, Psetta maxima, Gammarus pulex, Trichoplusia ni, Meloidogyne chitwoodi, Pan troglodytes verus, Spadella cephaloptera, Globodera rostochiensis, Lymnaea stagnalis, Lates calcarifer, Calanus finmarchicus, Strongyloides stercoralis, Oncorhynchus nerka, Gryllus bimaculatus, Sebastes rastrelliger, Drosophila yakuba, Thymallus thymallus, Ancylostoma ceylanicum, Solea senegalensis, Epiphyas postvittana, Callinectes sapidus, Peripatopsis sedgwicki, Fenneropenaeus chinensis, Coregonus clupeaformis, Torpedo californica, Thunnus thynnus, Cynoglossus semilaevis, Salvelinus fontinalis, Schmidtea mediterranea, Apis mellifera, Tribolium castaneum, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST038291
species: Caenorhabditis elegans
source: miRBase, original name: cel-mir-54 (MI0000025)

Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGGATATGAGACGACGAGAACA

miRNA*
 TACCCGTAATCTTCATAATCCGAG

mismatches: 5
bulges: 2
View larger
pre-miRNA
 GTGAGTCGCGCTCTGACTAGGATATGAGACGACGAGAACATTGCTTTTTTAAAAGACTTGTACCCGTAATCTTCATAATCCGAGTCAGGGCTAGCTGAC

dot-bracket secondary structure
((.(((...(((((((((.((((((((((..(((.(.(((...((((....))))...))).).)))..)).)))).)))).)))))))))..))).))


SIMILARITIES
miRBase cel-mir-54: 2e-51

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references
[1] Warf MB, Johnson WE, Bass BL, RNA. 17:563-577(2011)., "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer"
[2] Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D, Curr Biol. 13:807-818(2003)., "MicroRNAs and other tiny endogenous RNAs in C. elegans"
[3] Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP, Genes Dev. 17:991-1008(2003)., "The microRNAs of Caenorhabditis elegans"
[4] Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP, Cell. 127:1193-1207(2006)., "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
[5] Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW, Nat Struct Mol Biol. 17:173-179(2010)., "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
[6] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
[7] Lau NC, Lim LP, Weinstein EG, Bartel DP, Science. 294:858-862(2001)., "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans"



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