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Species belonging to selected taxon:
Caenorhabditis elegans
,
Heterorhabditis bacteriophora
,
Caenorhabditis japonica
,
Caenorhabditis brenneri
,
Caenorhabditis remanei
ABOUT THIS RECORD
ID:
MNEST038352
species:
Caenorhabditis elegans
miRNA family:
mir-248
source:
miRBase, original name:
cel-mir-248
(
MI0000324
)
Taxonomy by NCBI:
Caenorhabditis elegans
Caenorhabditis
Peloderinae
Rhabditidae
Rhabditoidea
Rhabditida
Chromadorea
Nematoda
Pseudocoelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATACACGTGCACGGATAACGCTCA
miRNA*
AGCGGTATCCAGCCGATGTTTTC
mismatches:
4
bulges:
3
View larger
pre-miRNA
TTTCCCGGCTGCAACTACGGTA
AGCGGTATCCAGCCGATGTTTTC
AATACTGCATTTGA
ATACACGTGCACGGATAACGCTCA
TTGTTTTTCGCATGC
dot-bracket secondary structure
.......(((((((..(((((.
((((.(((((.((((.(((.(((
((........))))
).))))).))..))))).)))).)
))))..)).))).))
SIMILARITIES
miRBase
crm-mir-248
:
0.000000000005
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-248: 1e-49
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned, Northern, Solexa
references
[
1
] Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP,
Genes Dev. 17:991-1008(2003).
,
"The microRNAs of Caenorhabditis elegans"
[
2
] Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP,
Cell. 127:1193-1207(2006).
,
"Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
[
3
] Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW,
Nat Struct Mol Biol. 17:173-179(2010).
,
"Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
[
4
] Kato M, de Lencastre A, Pincus Z, Slack FJ,
Genome Biol. 10:R54(2009).
,
"Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"