ABOUT THIS RECORDspecies: Caenorhabditis elegans
miRNA family: mir-790
source: miRBase, original name: cel-mir-790 (MI0005191)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGCACTCGCGAACACCGCG miRNA* CGGCGTTAGCTCTGTGTCAAACC mismatches: 5 bulges: 1 |
pre-miRNA
GCCGGCTTGGCACTCGCGAACACCGCGATTTCACTTATAACTCGCGGCGTTAGCTCTGTGTCAAACCGGC
dot-bracket secondary structure
(((((.(((((((..((.(((.((((((.............)))))).))).))...))))))).)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
deep sequencing data evidence
references
[1] Warf MB, Johnson WE, Bass BL, RNA. 17:563-577(2011)., "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer"
[2] Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP, Cell. 127:1193-1207(2006)., "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
[3] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
GCCGGCTTGGCACTCGCGAACACCGCGATTTCACTTATAACTCGCGGCGTTAGCTCTGTGTCAAACCGGC
dot-bracket secondary structure
(((((.(((((((..((.(((.((((((.............)))))).))).))...))))))).)))))
SIMILARITIES| miRBase crm-mir-790-2: 0.0000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-790: 5e-33 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
deep sequencing data evidence
references
[1] Warf MB, Johnson WE, Bass BL, RNA. 17:563-577(2011)., "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer"
[2] Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP, Cell. 127:1193-1207(2006)., "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
[3] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
