ABOUT THIS RECORDspecies: Caenorhabditis remanei
miRNA family: mir-1
source: miRBase, original name: crm-mir-1 (MI0011077)
Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTATGT miRNA* ATACTTCCTTACATGCCCATA mismatches: 2 bulges: 1 |
pre-miRNA
GCTGTGCCGAGCTGCATACTTCCTTACATGCCCATACTATATCAGTAATGGATATGGAATGTAAAGAAGTATGTAGAACGGTTTTGAAAAACGGCT
dot-bracket secondary structure
(((((((((..(((((((((((.((((((..(((((((((.......)))).))))).)))))).)))))))))))..))))........))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GCTGTGCCGAGCTGCATACTTCCTTACATGCCCATACTATATCAGTAATGGATATGGAATGTAAAGAAGTATGTAGAACGGTTTTGAAAAACGGCT
dot-bracket secondary structure
(((((((((..(((((((((((.((((((..(((((((((.......)))).))))).)))))).)))))))))))..))))........))))).
SIMILARITIES| miRBase cel-mir-1: 3e-32 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 3e-38 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
