ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-44
source: miRBase, original name: ppc-mir-45 (MI0011128)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACTAGAGACACATTCAGCT miRNA* CTGGATGTGTGATCTTGGTCGTA mismatches: 3 bulges: 2 |
pre-miRNA
GAGTCGCAGCCCCGCTCTGGATGTGTGATCTTGGTCGTATCCGCGCAAATGCTCAATGATTATGACTAGAGACACATTCAGCTTGGGGCCGGCTCT
dot-bracket secondary structure
((((((..((((((..((((((((((..(((.(((((((((.(.((....)).)...)).)))))))))).))))))))))..)))))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GAGTCGCAGCCCCGCTCTGGATGTGTGATCTTGGTCGTATCCGCGCAAATGCTCAATGATTATGACTAGAGACACATTCAGCTTGGGGCCGGCTCT
dot-bracket secondary structure
((((((..((((((..((((((((((..(((.(((((((((.(.((....)).)...)).)))))))))).))))))))))..)))))))))))).
SIMILARITIES| miRBase crm-mir-45: 0.000000005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-44: 1e-46 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
