ABOUT THIS RECORDspecies: Pristionchus pacificus
source: miRBase, original name: ppc-mir-55a (MI0011220)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCCGTAAGCCATTCTGTCGAG miRNA* AGGCAGCAATGCTAACGAGTGTG mismatches: 3 bulges: 2 |
pre-miRNA
ATGCTCACTCTGAGGGGAGTTGCCACTAGGCAGCAATGCTAACGAGTGTGTTGATCTTTCGTATCATCTCATACCCGTAAGCCATTCTGTCGAGCGGCTC
TCTCCATTCCGAGTGAGGAT
dot-bracket secondary structure
((.(((((((.((((((((..(((.((.(((((.((((((.(((.(((((.(((((....).))))...))))).))).)).))))))))).)).))).)
)))))..)).))))))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
ATGCTCACTCTGAGGGGAGTTGCCACTAGGCAGCAATGCTAACGAGTGTGTTGATCTTTCGTATCATCTCATACCCGTAAGCCATTCTGTCGAGCGGCTC
TCTCCATTCCGAGTGAGGAT
dot-bracket secondary structure
((.(((((((.((((((((..(((.((.(((((.((((((.(((.(((((.(((((....).))))...))))).))).)).))))))))).)).))).)
)))))..)).))))))).))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
