ABOUT THIS RECORDspecies: Lottia gigantea
miRNA family: mir-8
source: miRBase, original name: lgi-mir-8 (MI0010104)
Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATACTGTCAGGTAAAGATGTC miRNA* CATCTTACTTTACAGCATTAGA mismatches: 4 bulges: 1 |
pre-miRNA
GAGAGAAACGAATTCTGGTGCCATCTTACTTTACAGCATTAGATTTGTACGAACATTTTCTAATACTGTCAGGTAAAGATGTCCACAAAGTTCGTGAA
dot-bracket secondary structure
.......(((((((...(((.((((((((((.((((.((((((..(((....)))...)))))).)))).)))).))))))..)))..)))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
GAGAGAAACGAATTCTGGTGCCATCTTACTTTACAGCATTAGATTTGTACGAACATTTTCTAATACTGTCAGGTAAAGATGTCCACAAAGTTCGTGAA
dot-bracket secondary structure
.......(((((((...(((.((((((((((.((((.((((((..(((....)))...)))))).)))).)))).))))))..)))..)))))))...
SIMILARITIES| miRBase bmo-mir-8: 0.000000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-8: 0.00000002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
