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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST003889
species: Oryza sativa
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGCCAAGGATGACTTGCCGG

miRNA*
 GGCAAGTCTGTCCTTGGCTAC

mismatches: 0
bulges: 1
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pre-miRNA
 GCCATGCGCTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAG
CCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGC

dot-bracket secondary structure
((((.((((((.((((((((((..(((.((.((((((((((((((((((((((((.(((..(((((...)))))(((((...))))))))..)))....)
)))))))))).)))))))))).)))))...)))))))))))))))).))))


SIMILARITIES
miRBase osa-MIR169c: 6e-59

PMRD osa-miRf10630-akr: 4e-60

microPC miR169: 5e-47		UniProt no hits

RFAM MIR169_2: 4e-60		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST044916)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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