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Species belonging to selected taxon:

Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Paullinia cupana var. sorbilis, Citrus clementina



ABOUT THIS RECORD

ID: MNEST000389
species: Citrus sinensis
miRNA family: MIR3518
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGACCTTTGGGGATATTTGGT

miRNA*
 CGTTAGATCCCCAAAGGTTCCC

mismatches: 5
bulges: 1
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pre-miRNA
 GTCAGGGTTTTGGACCTTTGGGGATATTTGGTGGCCCAAATTCCTTAAGGCTGTCTGGAAATACCGGATTCAAAGCAATTTTGGTGGTGCTCCGGGGTTG
GCTTTCACGTGGAATACTGGGGATATTTATAGGTCCTGGATTGAAGAACTGGTTAGCACTTTCACGTATAATCAAGTGGCCCTCCCCAACGGGAAATCTG
AATTGAGGCTTGCCCCCGTTAGATCCCCAAAGGTTCCCCGTTTATT

dot-bracket secondary structure
....(((....((((((((((((((...((..((((((....((..((.(((((((((.....))))))....)))..))..))))).)))..(((((.(
(((((.((((((((..((((((.((....))..))))))..((..((.....))..)).))))))))....(((.((..(((........)))..)).))
)...)))))).)))))))....))))))))))))))))).......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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