ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR395
source: miRBase, original name: pab-MIR395 (MI0016121)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGAAGTGTTTGGAGGAACTT miRNA* GTTCCTTCAATCACTTCGCCG mismatches: 2 bulges: 0 |
pre-miRNA
CTCACAGCTGGTTCTCAATGCCGGGAGTTCCTTCAATCACTTCGCCGAATCCGAAAGCATTTCACTGAAGTGTTTGGAGGAACTTCGGGCGTCACTGAAC
TGC
dot-bracket secondary structure
......((.(((((...(((((.(((((((((((((.(((((((..(((..(....)...)))..))))))).))))))))))))).)))))....))))
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
CTCACAGCTGGTTCTCAATGCCGGGAGTTCCTTCAATCACTTCGCCGAATCCGAAAGCATTTCACTGAAGTGTTTGGAGGAACTTCGGGCGTCACTGAAC
TGC
dot-bracket secondary structure
......((.(((((...(((((.(((((((((((((.(((((((..(((..(....)...)))..))))))).))))))))))))).)))))....))))
)))
SIMILARITIES| miRBase aly-MIR395i: 0.00008 PMRD no hits microPC miR395: 2e-27 | UniProt no hits RFAM no hits |
Identical with: miR395 from microPC (MNEST046453) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
