miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies



ABOUT THIS RECORD

ID: MNEST039384
species: Picea abies
miRNA family: MIR482
source: miRBase, original name: pab-MIR482b (MI0016127)

Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTCCCTATTCCTCCCATTCC

miRNA*
ATTGGGAGGATAGGAGAAGGCT

mismatches: 1
bulges: 2

View larger
pre-miRNA
ATGTGGATGGAAGTCTTGAGGATTGGGAGGATAGGAGAAGGCTGTTTGCTTAATTCTCAGTTGAAACCTGATTAGTCTTCCCTATTCCTCCCATTCCTAT
TGCCTCCATCACACATCCCTT


dot-bracket secondary structure
(((((((((((.((....((((.((((((((((((.((((((((....(....(((......)))....)..)))))))))))).)))))))).))))..
.)).)))))).))))).....



SIMILARITIES
miRBase pab-MIR482c: 0.000000006

PMRD pta-miR482c: 0.0000004

microPC miR482: 0.0004
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"




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