ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR535
source: miRBase, original name: pab-MIR535 (MI0016129)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAACGAGAGAGAGCACGC miRNA* GTGCTCTCTGCTTGTAGTCAGC mismatches: 1 bulges: 1 |
pre-miRNA
AAATATCCGTTCTATTCCATTGCTGACAACGAGAGAGAGCACGCCTGTATTCTCTTATATGAATTTTGCATATGTGGGCGTCCATGCGTGCTCTCTGCTT
GTAGTCAGCAAAGCGACTGCATCTCAACT
dot-bracket secondary structure
.......((((........((((((((.((((((((((((((((.((.((.(((.((((((.......)))))).))).)).)).))))))))))).)))
)).))))))))))))..............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
AAATATCCGTTCTATTCCATTGCTGACAACGAGAGAGAGCACGCCTGTATTCTCTTATATGAATTTTGCATATGTGGGCGTCCATGCGTGCTCTCTGCTT
GTAGTCAGCAAAGCGACTGCATCTCAACT
dot-bracket secondary structure
.......((((........((((((((.((((((((((((((((.((.((.(((.((((((.......)))))).))).)).)).))))))))))).)))
)).))))))))))))..............
SIMILARITIES| miRBase osa-MIR535: 0.00002 PMRD vvi-miR535c: 0.00002 microPC miR535: 2e-42 | UniProt no hits RFAM MIR535: 0.0005 |
Identical with: miR535 from microPC (MNEST046789) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
