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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST039416
species: Pinus taeda
miRNA family: MIR156
source: miRBase, original name: pta-MIR156b (MI0005777)

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGAAGATAGAGAGCACAAC

miRNA*
TGTGCTCTCGTTGATTTTGTC

mismatches: 6
bulges: 1

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pre-miRNA
GATGACAGAAGATAGAGAGCACAACCGCTCAGATGCCGGCACTCTGCGTTTGAGGTGTATGTGCTCTCGTTGATTTTGTCATC

dot-bracket secondary structure
((((((((((....(((((((((..(((((((((((.(.....).)))))))).)))..))))))))).....))))))))))


SIMILARITIES
miRBase pta-MIR156a: 3e-25

PMRD pta-miR156b: 6e-42

microPC miR157: 7e-23
UniProt no hits

RFAM no hits

Identical with: pta-miR156b from PMRD (MNEST051552)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"




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