ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR156
source: miRBase, original name: pta-MIR156b (MI0005777)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGATAGAGAGCACAAC miRNA* TGTGCTCTCGTTGATTTTGTC mismatches: 6 bulges: 1 |
pre-miRNA
GATGACAGAAGATAGAGAGCACAACCGCTCAGATGCCGGCACTCTGCGTTTGAGGTGTATGTGCTCTCGTTGATTTTGTCATC
dot-bracket secondary structure
((((((((((....(((((((((..(((((((((((.(.....).)))))))).)))..))))))))).....))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
GATGACAGAAGATAGAGAGCACAACCGCTCAGATGCCGGCACTCTGCGTTTGAGGTGTATGTGCTCTCGTTGATTTTGTCATC
dot-bracket secondary structure
((((((((((....(((((((((..(((((((((((.(.....).)))))))).)))..))))))))).....))))))))))
SIMILARITIES| miRBase pta-MIR156a: 3e-25 PMRD pta-miR156b: 6e-42 microPC miR157: 7e-23 | UniProt no hits RFAM no hits |
Identical with: pta-miR156b from PMRD (MNEST051552) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
