ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR159
source: miRBase, original name: pta-MIR159c (MI0005780)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGATTGAAGGGAGCTCCC miRNA* GAGCTGATTTTGTCCAGGA mismatches: 3 bulges: 2 |
pre-miRNA
GATGTGTGAATGATGCGGGAGCTGATTTTGTCCAGGAAATGTCTTTTCCTTGGATTGAAGGGAGCTCCCTTATGTAGCATACATT
dot-bracket secondary structure
((((((((....(((.(((((((..(((.((((((((((.....))))).))))).)))...))))))).)))....))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
GATGTGTGAATGATGCGGGAGCTGATTTTGTCCAGGAAATGTCTTTTCCTTGGATTGAAGGGAGCTCCCTTATGTAGCATACATT
dot-bracket secondary structure
((((((((....(((.(((((((..(((.((((((((((.....))))).))))).)))...))))))).)))....))))))))
SIMILARITIES| miRBase smo-MIR159: 0.000001 PMRD pta-miR159c: 4e-43 microPC miR319: 0.000004 | UniProt no hits RFAM MIR159: 0.00007 |
Identical with: pta-miR159c from PMRD (MNEST051555) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
