ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR166
source: miRBase, original name: pta-MIR166a (MI0005782)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGACT mismatches: 4 bulges: 0 |
pre-miRNA
GTTGATTGAGGGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCCCCCAATCGG
dot-bracket secondary structure
).((((((.((((((((..((((((..((((..(((((((((((((...)))).)))))))))..))))..))))))..)))))))).)))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
GTTGATTGAGGGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCCCCCAATCGG
dot-bracket secondary structure
).((((((.((((((((..((((((..((((..(((((((((((((...)))).)))))))))..))))..))))))..)))))))).)))))).
SIMILARITIES| miRBase vvi-MIR166e: 5.0E-9 PMRD pta-miR166a: 2.0E-48 microPC miR166: 7.0E-39 | UniProt no hits RFAM 6mir-166: 8.0E-8 |
Identical with: miR166 from microPC (MNEST044922), pta-miR166a from PMRD , miR166 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
